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Widget Catalog

D. discoideum example

S. cerevisiae example

Schema
   File
   Scatterplots
   Genome Map
   Expression Profiles
   GO Term Finder
   Expression Profiles (2)
   Heat Map
   Heat Map (2)
   GO Term Finder (2)
   Expression Profiles (3)

Spotlight

Our widgets for functional genomics use Orange, a data mining and machine learning suite. Orange can be accessed through scripting in Python, or by visual programming in Orange Canvas.

In functional genomics, we have also designed a web-based tool for mutant data analysis called GenePath (also featured in Science's NetWatch).

FRI > Biolab > Supplements > Microarray Data Mining with Visual Programming > S. cerevisiae Example > Scatterplot and Scatterplot (2) widgets

Scatterplot and Scatterplot (2) widgets

Two experimental points, representing the M/G1 cell cycle phase, from two different methods for yeast synchronization were used in two subsequent "Scatter Plot" widgets. As seen in the "Expression Profiles (2)" and "Heat Map" widgets, genes with an increase in expression in M/G1 phase were obtained with this procedure.