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Installation

Widget Catalog

D. discoideum example

S. cerevisiae example

Schema
   File
   Scatterplots
   Genome Map
   Expression Profiles
   GO Term Finder
   Expression Profiles (2)
   Heat Map
   Heat Map (2)
   GO Term Finder (2)
   Expression Profiles (3)

Spotlight

Our widgets for functional genomics use Orange, a data mining and machine learning suite. Orange can be accessed through scripting in Python, or by visual programming in Orange Canvas.

In functional genomics, we have also designed a web-based tool for mutant data analysis called GenePath (also featured in Science's NetWatch).

FRI > Biolab > Supplements > Microarray Data Mining with Visual Programming > S. cerevisiae Example > Expression Profiles (3) widget

Expression Profiles (3) widget

Here we show the expression profiles of genes PIG1 (see the "Genome Map" widget) and PCL7 to demonstrate that these genes, although sharing the GO biological_process annotation, are not coexpressed. Comparison of the "Expression Profiles" and "Expression Profiles (3)" widgets graphs confirms that adjacent position, and not the functional relatedness, is the reason for coexpression in the case of CDC46 and PIG1 (see the "Genome Map" widget).