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Installation

Widget Catalog

D. discoideum example

S. cerevisiae example

Schema
   File
   Scatterplots
   Genome Map
   Expression Profiles
   GO Term Finder
   Expression Profiles (2)
   Heat Map
   Heat Map (2)
   GO Term Finder (2)
   Expression Profiles (3)

Spotlight

Our widgets for functional genomics use Orange, a data mining and machine learning suite. Orange can be accessed through scripting in Python, or by visual programming in Orange Canvas.

In functional genomics, we have also designed a web-based tool for mutant data analysis called GenePath (also featured in Science's NetWatch).

FRI > Biolab > Supplements > Microarray Data Mining with Visual Programming > S. cerevisiae Example > Heat Map widget

Heat Map widget

Here we display the genes with a peak in expression in M/G1 phase that were selected with the "Scatterplot" and "Scatterplot (2)" widgets.

The time points defining the columns were taken directly from the results of Spellman et al. (1998) and they represent time course gene expression measurements of four differently synchronized yeast cultures. Thus, each cell cycle phase is represented several times in the expression profile of each gene.