Our widgets for functional genomics use Orange, a data mining
and machine learning suite. Orange can be accessed through scripting in
Python,
or by visual programming in Orange Canvas.
In functional genomics, we have also designed a web-based tool for mutant data analysis called GenePath (also featured
in Science's NetWatch).
Here we show that the 800 genes have their peaks of expression in different
phases of the cell cycle.
The time points defining the columns were taken directly from the results of
Spellman et al. (1998) and they represent time course gene expression
measurements of four differently synchronized yeast cultures. Thus, each cell
cycle phase is represented several times in the expression profile of each gene.