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Installation

Widget Catalog



D. discoideum example



S. cerevisiae example

Schema
   File
   Scatterplots
   Genome Map
   Expression Profiles
   GO Term Finder
   Expression Profiles (2)
   Heat Map
   Heat Map (2)
   GO Term Finder (2)
   Expression Profiles (3)

Spotlight

Our widgets for functional genomics use Orange, a data mining and machine learning suite. Orange can be accessed through scripting in Python, or by visual programming in Orange Canvas.

In functional genomics, we have also designed a web-based tool for mutant data analysis called GenePath (also featured in Science's NetWatch).


FRI > Biolab > Supplements > Microarray Data Mining with Visual Programming > S. cerevisiae Example > File widget

File widget

The 800 cell cycle regulated genes (Spellman et al., 1998) were selected as input for the schema. We load the microarray data file "yeast_800_cell_cycle_genes.tab" into the schema with the "File" widget. Recently opened files are listed in the pull-down combo box.

See Dictyostelium example for details about data format.