About this supplement

Installation

Widget Catalog

D. discoideum example

Schema
   File
   K-Means Clustering
   Expression Profiles
   Heat Map
   Scatterplot
   Expression Profiles (3)
   Heat Map (2)
   GO Term Finder
   Data Table
   Expression Profiles (2)
   Genome Map
   GO Term Finder (2)

S. cerevisiae example

Spotlight

Our widgets for functional genomics use Orange, a data mining and machine learning suite. Orange can be accessed through scripting in Python, or by visual programming in Orange Canvas.

In functional genomics, we have also designed a web-based tool for mutant data analysis called GenePath (also featured in Science's NetWatch).

FRI > Biolab > Supplements > Microarray Data Mining with Visual Programming > D. discoideum Example > ScatterPlot widget

Scatterplot widget

Data selected in the "Heat Map" widget are displayed in this widget as a scatterplot. The expression data in two selected time points (2 and 20 hour) are displayed. We have selected a region (polygon) of expression for further visualization. The selected data are grouped into one class, the unselected data in the other and send out to the "Expression Profiles (3)" widget.