About this supplement

Installation

Widget Catalog

D. discoideum example

Schema
   File
   K-Means Clustering
   Expression Profiles
   Heat Map
   Scatterplot
   Expression Profiles (3)
   Heat Map (2)
   GO Term Finder
   Data Table
   Expression Profiles (2)
   Genome Map
   GO Term Finder (2)

S. cerevisiae example

Spotlight

Our widgets for functional genomics use Orange, a data mining and machine learning suite. Orange can be accessed through scripting in Python, or by visual programming in Orange Canvas.

In functional genomics, we have also designed a web-based tool for mutant data analysis called GenePath (also featured in Science's NetWatch).

FRI > Biolab > Supplements > Microarray Data Mining with Visual Programming > D. discoideum Example

Genome Map widget

Input to this widget are genes from cluster "1" that we have selected in the "Heat Map" widget. Genomic position of input genes is displayed according to the loaded loci data.

We have selected a cluster of genes on Chromosome 2. A new data token is created and sent to the "GO Term Finder (2)" where we can look for significant GO terms in the selected group of genes.