Data set name: prostate

Brief description:

Gene expression measurements for samples of prostate tumors and adjacent prostate tissue not containing tumor were used to build this classification model.

Platform: Affymetrix Human Genome U95Av2 Array

Diagnostic classes:

- normal tissue (normal): 50 examples (49.0%)

- prostate tumor (tumor): 52 examples (51.0%)

Predictive accuracy with 10-fold cross validation (classifying using the best projection with eight attributes):

Classification accuracy: 85.36%

Area under curve (AUC): 0.914

	Score: 95.07% Genes: 38028_at: LIM domain only 3 (rhombotin-like 2), LMO3 40282_s_at: D component of complement (adipsin), DF 41504_s_at: v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian), MAF 1767_s_at: "transforming growth factor, beta 3", TGFB3 31527_at: ribosomal protein S2, RPS2 39756_g_at: X-box binding protein 1, XBP1 37639_at: "hepsin (transmembrane protease, serine 1)", HPN 33121_g_at: regulator of G-protein signalling 10, RGS10
	Score: 93.49% Genes: 33137_at: latent transforming growth factor beta binding protein 4, LTBP4 41504_s_at: v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian), MAF 38028_at: LIM domain only 3 (rhombotin-like 2), LMO3 37720_at: heat shock 60kDa protein 1 (chaperonin), HSPD1 37639_at: "hepsin (transmembrane protease, serine 1)", HPN 40436_g_at: "solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6", SLC25A6
	Score: 92.20% Genes: 38087_s_at: "S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog)", S100A4 41504_s_at: v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian), MAF 37639_at: "hepsin (transmembrane protease, serine 1)", HPN 40435_at: "solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6", SLC25A6

Attribute ranking

Following is the histogram of genes showing how often are they present in one of the top 100 radviz visualizations with 8 attributes.

Genes: 37639_at: "hepsin (transmembrane protease, serine 1)", HPN 32598_at: NEL-like 2 (chicken), NELL2 40282_s_at: D component of complement (adipsin), DF 38028_at: LIM domain only 3 (rhombotin-like 2), LMO3 38406_f_at: prostaglandin D2 synthase 21kDa (brain), PTGDS 37720_at: heat shock 60kDa protein 1 (chaperonin), HSPD1 39756_g_at: X-box binding protein 1, XBP1 556_s_at: glutathione S-transferase M1 /// glutathione S-transferase M2 (muscle) /// glutathione S-transferase M4, GSTM1 /// GSTM2 /// GSTM4 37366_at: PDZ and LIM domain 5, PDLIM5 1767_s_at: "transforming growth factor, beta 3", TGFB3 41468_at: T cell receptor gamma constant 2 /// T cell receptor gamma variable 9 /// similar to T-cell receptor gamma chain C region PT-gamma-1/2 /// similar to T-cell receptor gamma chain V region PT-gamma-1/2 precursor /// TCR gamma alternate reading frame protein, TRGC2 /// TRGV9 /// LOC442532 /// LOC442670 /// TARP 40436_g_at: "solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6", SLC25A6 41288_at: "calmodulin 1 (phosphorylase kinase, delta)", CALM1 38087_s_at: "S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog)", S100A4 39939_at: "collagen, type IV, alpha 6", COL4A6 38634_at: "retinol binding protein 1, cellular", RBP1 41504_s_at: v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian), MAF 36666_at: "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", P4HB 575_s_at: tumor-associated calcium signal transducer 1, TACSTD1 914_g_at: v-ets erythroblastosis virus E26 oncogene like (avian), ERG