Data set name: GSE3726

Brief description:

Frozen samples from the original dataset were used to distinguish between colon and breast cancer patients based on gene expression values.

Platform: Affymetrix GeneChip Human Genome U133 Array Set HG-U133A

Diagnostic classes:

- breast cancer (breast): 31 examples (59.6%)

- colon cancer (colon): 21 examples (40.4%)

Predictive accuracy with 10-fold cross validation (classifying using the best projection with eight attributes):

Classification accuracy: 94.00%

Area under curve (AUC): 0.933

	Score: 99.96% Genes: 209602_s_at: GATA binding protein 3, GATA3 205225_at: estrogen receptor 1, ESR1 221869_at: KIAA1196 protein, GM632 209604_s_at: GATA binding protein 3, GATA3 219508_at: glucosaminyl (N-acetyl) transferase 3, mucin type, GCNT3 208383_s_at: phosphoenolpyruvate carboxykinase 1 (soluble), PCK1 202669_s_at: ephrin-B2, EFNB2 213509_x_at: carboxylesterase 2 (intestine, liver), CES2
	Score: 99.92% Genes: 203928_x_at: microtubule-associated protein tau, MAPT 221869_at: KIAA1196 protein, GM632 205225_at: estrogen receptor 1, ESR1 213953_at: keratin 20, KRT20 202669_s_at: ephrin-B2, EFNB2 208383_s_at: phosphoenolpyruvate carboxykinase 1 (soluble), PCK1
	Score: 99.86% Genes: 213441_x_at: SAM pointed domain containing ets transcription factor, SPDEF 209603_at: GATA binding protein 3, GATA3 213953_at: keratin 20, KRT20 219508_at: glucosaminyl (N-acetyl) transferase 3, mucin type, GCNT3

Attribute ranking

Following is the histogram of genes showing how often are they present in one of the top 100 radviz visualizations with 8 attributes.

Genes: 202669_s_at: ephrin-B2, EFNB2 204653_at: transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha), TFAP2A 219508_at: glucosaminyl (N-acetyl) transferase 3, mucin type, GCNT3 213953_at: keratin 20, KRT20 205225_at: estrogen receptor 1, ESR1 209602_s_at: GATA binding protein 3, GATA3 221869_at: KIAA1196 protein, GM632 209604_s_at: GATA binding protein 3, GATA3 210239_at: iroquois homeobox protein 5, IRX5 209603_at: GATA binding protein 3, GATA3 214404_x_at: SAM pointed domain containing ets transcription factor, SPDEF 211357_s_at: aldolase B, fructose-bisphosphate, ALDOB 208383_s_at: phosphoenolpyruvate carboxykinase 1 (soluble), PCK1 213509_x_at: carboxylesterase 2 (intestine, liver), CES2 218687_s_at: mucin 13, epithelial transmembrane, MUC13 209309_at: alpha-2-glycoprotein 1, zinc, AZGP1 202575_at: cellular retinoic acid binding protein 2, CRABP2 213441_x_at: SAM pointed domain containing ets transcription factor, SPDEF 203928_x_at: microtubule-associated protein tau, MAPT 202831_at: glutathione peroxidase 2 (gastrointestinal), GPX2