Despite many studies highlighting the widespread occurrence and effects of resource movement between ecosystems, comparatively little is known about how anthropogenic alterations to ecosystems affect the strength, direction and importance of such fluxes. Hydrological regime and riparian land use cause well-documented changes in riverine larval invertebrate communities. Using a dataset from 66 sites collected over 20 years, we showed that such effects led to spatial and temporal differences in the density and type of larvae with winged adults within a river reach, altering the size and composition of the source pool from which adult aquatic insects can emerge. Mean annual larval densities varied 33-fold and the temporal range varied more than 20-fold between sites, associated with the hydrological regime and land cover and antecedent high and low flows, respectively. Densities of larvae with winged adults were greater in sites that had more algal coverage, agricultural land use, seasonally predictable flow regimes and faster water velocities. More interestingly, by influencing larval communities, riparian land use and the magnitude and frequency of high and low flows affected the size structure, dispersal ability and longevity of adults available to emerge from river reaches, potentially influencing the spatial extent and type of terrestrial consumers supported by aquatic prey. This suggests that anthropogenic alterations to land use or river flows will have both spatial and temporal effects on the flux and potential availability of adult aquatic insects to terrestrial consumers in many rivers.