Tu, Benjamin P

Publication with MATCHING institution:

Tu BP (2010) Ultradian metabolic cycles in yeast. None. [IF=None, Cited=0, 20946838].
Shi L, Tu BP (2015) Acetyl-CoA and the regulation of metabolism: mechanisms and consequences. Current Opinion in Cell
Biology. [IF=1.539, Cited=0, 25703630].
Huang Z, Cai L, Tu BP (2015) Dietary control of chromatin. Current Opinion in Cell Biology. [IF=1.539, Cited=0, 26094239].
Comerford SA, Huang Z, Du X, ..., Tu BP (2014) Acetate dependence of tumors. Cell. [IF=8.479, Cited=344, 25525877].
Mashimo T, Pichumani K, Vemireddy V, ..., Bachoo RM (2014) Acetate is a bioenergetic substrate for human glioblastoma
and brain metastases. Cell. [IF=8.479, Cited=0, 25525878].
Pendleton KE, Chen B, Liu K, ..., Conrad NK (2017) The U6 snRNA m⁶A Methyltransferase METTL16 Regulates SAM
Synthetase Intron Retention. Cell. [IF=8.479, Cited=0, 28525753].
Yang YS, Kato M, Wu X, ..., Tu BP (2019) Yeast Ataxin-2 Forms an Intracellular Condensate Required for the Inhibition of
TORC1 Signaling during Respiratory Growth. Cell. [IF=8.479, Cited=0, 30982600].
Kato M, Yang YS, Sutter BM, ..., Tu BP (2019) Redox State Controls Phase Separation of the Yeast Ataxin-2 Protein via
Reversible Oxidation of Its Methionine-Rich Low-Complexity Domain. Cell. [IF=8.479, Cited=72, 30982603].
Lee CD, Tu BP (2015) Glucose-Regulated Phosphorylation of the PUF Protein Puf3 Regulates the Translational Fate of Its
Bound mRNAs and Association with RNA Granules. Cell Reports. [IF=1.738, Cited=0, 26051939].
Dutchak PA, Laxman S, Estill SJ, ..., Tu BP (2015) Regulation of Hematopoiesis and Methionine Homeostasis by mTORC1
Inhibitor NPRL2. Cell Reports. [IF=1.738, Cited=0, 26166573].
Wang GZ, Hickey SL, Shi L, ..., Konopka G (2015) Cycling Transcriptional Networks Optimize Energy Utilization on a
Genome Scale. Cell Reports. [IF=1.738, Cited=0, 26655902].
Dutchak PA, Estill-Terpack SJ, Plec AA, ..., Tu BP (2018) Loss of a Negative Regulator of mTORC1 Induces Aerobic
Glycolysis and Altered Fiber Composition in Skeletal Muscle. Cell Reports. [IF=1.738, Cited=0, 29768191].
Liu K, Santos DA, Hussmann JA, ..., Tu BP (2021) Regulation of translation by methylation multiplicity of 18S rRNA. Cell
Reports. [IF=1.738, Cited=14, 33691096].
Savir Y, Tu BP, Springer M (2015) Competitive inhibition can linearize dose-response and generate a linear rectifier.
Cell Systems. [IF=1.971, Cited=0, 26495436].
Kato M, Tu BP, McKnight SL (2021) Redox-mediated regulation of low complexity domain self-association. Current Opinion
in Genetics and Development. [IF=0.801, Cited=5, 33454579].
Dentel B, Angeles-Perez L, Ren C, ..., Tsai PT (2022) Increased glycine contributes to synaptic dysfunction and early
mortality in Nprl2 seizure model. iScience. [IF=1.12, Cited=0, 35602938].
Laxman S, Tu BP, McKnight SL (2014) Concerted effort: oscillations in global gene expression during nematode
development. Molecular Cell. [IF=2.773, Cited=1, 24507713].
Ye C, Sutter BM, Wang Y, ..., Tu BP (2017) A Metabolic Function for Phospholipid and Histone Methylation. Molecular
Cell. [IF=2.773, Cited=0, 28366644].
Ye C, Sutter BM, Wang Y, ..., Tu BP (2019) Demethylation of the Protein Phosphatase PP2A Promotes Demethylation of
Histones to Enable Their Function as a Methyl Group Sink. Molecular Cell. [IF=2.773, Cited=0, 30772176].
Haws SA, Yu D, Ye C, ..., Denu JM (2020) Methyl-Metabolite Depletion Elicits Adaptive Responses to Support
Heterochromatin Stability and Epigenetic Persistence. Molecular Cell. [IF=2.773, Cited=0, 32208170].
Zeinert RD, Baniasadi H, Tu BP, Chien P (2020) The Lon Protease Links Nucleotide Metabolism with Proteotoxic Stress.
Molecular Cell. [IF=2.773, Cited=0, 32755596].
Hsieh WC, Sutter BM, Ruess H, ..., Tu BP (2022) Glucose starvation induces a switch in the histone acetylome for
activation of gluconeogenic and fat metabolism genes. Molecular Cell. [IF=2.773, Cited=0, 34995509].
Ye C, Tu BP (2018) Sink into the Epigenome: Histones as Repositories That Influence Cellular Metabolism. Trends in
Endocrinology and Metabolism. [IF=2.064, Cited=0, 30001904].
Walsh CT, Tu BP, Tang Y (2017) Eight Kinetically Stable but Thermodynamically Activated Molecules that Power Cell
Metabolism. Chemical Reviews. [IF=11.712, Cited=75, 29272116].
Walsh CT, Tu BP, Tang Y (2018) Correction to: Eight Kinetically Stable but Thermodynamically Activated Molecules that
Power Cell Metabolism. Chemical Reviews. [IF=11.712, Cited=0, 29620360].
Chen J, Sutter BM, Shi L, Tu BP (2017) GATOR1 regulates nitrogenic cataplerotic reactions of the mitochondrial TCA
cycle. Nature Chemical Biology. [IF=2.623, Cited=0, 28920930].
Tu BP, McKnight SL (2006) Metabolic cycles as an underlying basis of biological oscillations. Nature Reviews Molecular
Cell Biology. [IF=19.213, Cited=132, 16823381].
Kuang Z, Cai L, Zhang X, ..., Boeke JD (2014) High-temporal-resolution view of transcription and chromatin states across
distinct metabolic states in budding yeast. Nature Structural and Molecular Biology. [IF=2.542, Cited=0, 25173176].
Liu K, Sutter BM, Tu BP (2021) Autophagy sustains glutamate and aspartate synthesis in Saccharomyces cerevisiae during
nitrogen starvation. Nature Communications. [IF=3.268, Cited=0, 33397945].
Ölmez TT, Moreno DF, Liu P, ..., Acar M (2023) Sis2 regulates yeast replicative lifespan in a dose-dependent manner.
Nature Communications. [IF=3.268, Cited=0, 38012152].
Shi L, Tu BP (2014) Protein acetylation as a means to regulate protein function in tune with metabolic state.
Biochemical Society Transactions. [IF=0.925, Cited=0, 25109999].
Lin Y, Zhou X, Kato M, ..., McKnight SL (2020) Redox-mediated regulation of an evolutionarily conserved cross-β
structure formed by the TDP43 low complexity domain. Proceedings of the National Academy of Sciences of the United
States of America. [IF=2.765, Cited=30, 33144500].
Rowicka M, Kudlicki A, Tu BP, Otwinowski Z (2007) High-resolution timing of cell cycle-regulated gene expression.
Proceedings of the National Academy of Sciences of the United States of America. [IF=2.765, Cited=0, 17827275].
Tu BP, Mohler RE, Liu JC, ..., McKnight SL (2007) Cyclic changes in metabolic state during the life of a yeast cell.
Proceedings of the National Academy of Sciences of the United States of America. [IF=2.765, Cited=167, 17940006].
Tu BP, McKnight SL (2009) Evidence of carbon monoxide-mediated phase advancement of the yeast metabolic cycle.
Proceedings of the National Academy of Sciences of the United States of America. [IF=2.765, Cited=10, 19706514].
Shi L, Tu BP (2013) Acetyl-CoA induces transcription of the key G1 cyclin CLN3 to promote entry into the cell division
cycle in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America.
[IF=2.765, Cited=0, 23589851].
Agmon N, Tang Z, Yang K, ..., Boeke JD (2017) Low escape-rate genome safeguards with minimal molecular perturbation of
Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America.
[IF=2.765, Cited=0, 28174266].
Huang Z, Zhang M, Plec AA, ..., Tu BP (2018) ACSS2 promotes systemic fat storage and utilization through selective
regulation of genes involved in lipid metabolism. Proceedings of the National Academy of Sciences of the United States
of America. [IF=2.765, Cited=67, 30228117].
Sato S, Jung H, Nakagawa T, ..., Uyeda K (2016) Metabolite Regulation of Nuclear Localization of Carbohydrate-response
Element-binding Protein (ChREBP): ROLE OF AMP AS AN ALLOSTERIC INHIBITOR. Journal of Biological Chemistry. [IF=1.122,
Cited=0, 26984404].
Lee CD, Tu BP (2017) Metabolic influences on RNA biology and translation. Critical Reviews in Biochemistry and Molecular
Biology. [IF=1.56, Cited=0, 28152618].
Zhang L, Das P, Schmolke M, ..., Fontoura BMA (2012) Inhibition of pyrimidine synthesis reverses viral virulence factor-
mediated block of mRNA nuclear export. Journal of Cell Biology. [IF=1.509, Cited=0, 22312003].
Wu X, Tu BP (2011) Selective regulation of autophagy by the Iml1-Npr2-Npr3 complex in the absence of nitrogen
starvation. Molecular Biology of the Cell. [IF=0.848, Cited=0, 21900499].
Shi L, Sutter BM, Ye X, Tu BP (2010) Trehalose is a key determinant of the quiescent metabolic state that fuels cell
cycle progression upon return to growth. Molecular Biology of the Cell. [IF=0.848, Cited=0, 20427572].
Agmon N, Temple J, Tang Z, ..., Boeke JD (2020) Phylogenetic debugging of a complete human biosynthetic pathway
transplanted into yeast. Nucleic Acids Research. [IF=4.663, Cited=0, 31745563].
Santos DA, Shi L, Tu BP, Weissman J (2019) Cycloheximide can distort measurements of mRNA levels and translation
efficiency. Nucleic Acids Research. [IF=4.663, Cited=37, 30916348].
McGinnis MM, Sutter BM, Jahangiri S, Tu BP (2023) Exonuclease Xrn1 regulates TORC1 signaling in response to SAM
availability. None. [IF=None, Cited=0, 37808861].
Tu BP, Tu BP, McKnight SL, McKnight SL (2007) The yeast metabolic cycle: insights into the life of a eukaryotic cell.
Cold Spring Harbor Symposia on Quantitative Biology. [IF=0.889, Cited=26, 18419291].
Xiao Y, Nguyen S, Kim SH, ..., Phillips MA (2013) Product feedback regulation implicated in translational control of the
Trypanosoma brucei S-adenosylmethionine decarboxylase regulatory subunit prozyme. Molecular Microbiology. [IF=1.094,
Cited=0, 23634831].
Li Q, Leija C, Rijo-Ferreira F, ..., Phillips MA (2015) GMP synthase is essential for viability and infectivity of
Trypanosoma brucei despite a redundant purine salvage pathway. Molecular Microbiology. [IF=1.094, Cited=0, 26043892].
Cable J, Finley L, Tu BP, ..., Kaelin W (2019) Leveraging insights into cancer metabolism-a symposium report. Annals of
the New York Academy of Sciences. [IF=1.878, Cited=2, 31792987].
Tu BP, Kudlicki A, Rowicka M, McKnight SL (2005) Logic of the yeast metabolic cycle: temporal compartmentalization of
cellular processes. Science. [IF=7.729, Cited=503, 16254148].
Chen Z, Odstrcil EA, Tu BP, McKnight SL (2007) Restriction of DNA replication to the reductive phase of the metabolic
cycle protects genome integrity. Science. [IF=7.729, Cited=152, 17600220].
Laxman S, Sutter BM, Shi L, Tu BP (2014) Npr2 inhibits TORC1 to prevent inappropriate utilization of glutamine for
biosynthesis of nitrogen-containing metabolites. Science Signaling. [IF=1.6, Cited=0, 25515537].
Weiss CA, Hoberg JA, Liu K, ..., Winkler WC (2019) Single-Cell Microscopy Reveals That Levels of Cyclic di-GMP Vary
among Bacillus subtilis Subpopulations. Journal of Bacteriology. [IF=0.898, Cited=0, 31138629].
Orr MW, Weiss CA, Severin GB, ..., Lee VT (2018) A Subset of Exoribonucleases Serve as Degradative Enzymes for pGpG in
c-di-GMP Signaling. Journal of Bacteriology. [IF=0.898, Cited=0, 30249708].
Cai L, Tu BP (2012) Driving the cell cycle through metabolism. Annual Review of Cell and Developmental Biology.
[IF=2.757, Cited=0, 22578140].
Bhattacharya S, Tu BP (2024) Histone acylation at a glance. Journal of Cell Science. [IF=0.99, Cited=0, 38842578].
van de Poll F, Sutter BM, Acoba MG, ..., Tu BP (2023) Pbp1 associates with Puf3 and promotes translation of its target
mRNAs involved in mitochondrial biogenesis. PLoS Genetics. [IF=1.236, Cited=0, 37216416].
Laxman S, Sutter BM, Tu BP (2013) Methionine is a signal of amino acid sufficiency that inhibits autophagy through the
methylation of PP2A. None. [IF=None, Cited=0, 24362312].
An Z, Tassa A, Thomas C, ..., Levine B (2014) Autophagy is required for G₁/G₀ quiescence in response to nitrogen
starvation in Saccharomyces cerevisiae. None. [IF=None, Cited=0, 25126732].
Scarborough AM, Flaherty JN, Hunter OV, ..., Conrad NK (2021) SAM homeostasis is regulated by CFI_m-mediated
splicing of MAT2A. eLife. [IF=1.743, Cited=0, 33949310].
Xue J, Han Y, Baniasadi H, ..., Jiang Y (2021) TMEM120A is a coenzyme A-binding membrane protein with structural
similarities to ELOVL fatty acid elongase. eLife. [IF=1.743, Cited=0, 34374645].

Publication with MISSING institution:

Humston EM, Dombek KM, Tu BP, ..., Synovec RE (2011) Toward a global analysis of metabolites in regulatory mutants of
yeast. Analytical and Bioanalytical Chemistry. [IF=0.919, Cited=0, 21416166].
Kurtis MS, Tu BP, Gaya OA, ..., Sah RL (2001) Mechanisms of chondrocyte adhesion to cartilage: role of beta1-integrins,
CD44, and annexin V. Journal of Orthopaedic Research. [IF=1.22, Cited=33, 11781014].
Sutter BM, Wu X, Laxman S, Tu BP (2013) Methionine inhibits autophagy and promotes growth by inducing the SAM-responsive
methylation of PP2A. Cell. [IF=8.479, Cited=0, 23870128].
Laxman S, Sutter BM, Wu X, ..., Tu BP (2013) Sulfur amino acids regulate translational capacity and metabolic
homeostasis through modulation of tRNA thiolation. Cell. [IF=8.479, Cited=0, 23870129].
Cai L, McCormick MA, Kennedy BK, Tu BP (2013) Integration of multiple nutrient cues and regulation of lifespan by
ribosomal transcription factor Ifh1. Cell Reports. [IF=1.738, Cited=0, 24035395].
Mohler RE, Tu BP, Dombek KM, ..., Synovec RE (2007) Identification and evaluation of cycling yeast metabolites in two-
dimensional comprehensive gas chromatography-time-of-flight-mass spectrometry data. Journal of Chromatography A.
[IF=1.02, Cited=0, 18001745].
Marin-Valencia I, Yang C, Mashimo T, ..., Bachoo RM (2012) Analysis of tumor metabolism reveals mitochondrial glucose
oxidation in genetically diverse human glioblastomas in the mouse brain in vivo. None. [IF=None, Cited=0, 22682223].
Laxman S, Tu BP (2010) Systems approaches for the study of metabolic cycles in yeast. Current Opinion in Genetics and
Development. [IF=0.801, Cited=0, 21051220].
Cai L, Sutter BM, Li B, Tu BP (2011) Acetyl-CoA induces cell growth and proliferation by promoting the acetylation of
histones at growth genes. Molecular Cell. [IF=2.773, Cited=0, 21596309].
Chen LY, Zhang Y, Zhang Q, ..., Songyang Z (2012) Mitochondrial localization of telomeric protein TIN2 links telomere
regulation to metabolic control. Molecular Cell. [IF=2.773, Cited=0, 22885005].
Kriel A, Bittner AN, Kim SH, ..., Wang JD (2012) Direct regulation of GTP homeostasis by (p)ppGpp: a critical component
of viability and stress resistance. Molecular Cell. [IF=2.773, Cited=0, 22981860].
Kaochar S, Tu BP (2012) Gatekeepers of chromatin: Small metabolites elicit big changes in gene expression. Trends in
Biochemical Sciences. [IF=2.462, Cited=0, 22944281].
Cai L, Tu BP (2011) On acetyl-CoA as a gauge of cellular metabolic state. Cold Spring Harbor Symposia on Quantitative
Biology. [IF=0.889, Cited=55, 21900151].
Chen RL, Hsu YH, Ueda I, ..., Chuang SS (2007) Cytophagic histiocytic panniculitis with fatal haemophagocytic
lymphohistiocytosis in a paediatric patient with perforin gene mutation. Journal of Clinical Pathology. [IF=1.246,
Cited=0, 17601962].
Laxman S, Sutter BM, Tu BP (2010) Behavior of a metabolic cycling population at the single cell level as visualized by
fluorescent gene expression reporters. PLoS ONE. [IF=1.253, Cited=0, 20830298].
Li HY, Yeh PA, Chiu HC, ..., Tu BP (2011) Hyperphosphorylation as a defense mechanism to reduce TDP-43 aggregation. PLoS
ONE. [IF=1.253, Cited=0, 21850253].
Laxman S, Tu BP (2011) Multiple TORC1-associated proteins regulate nitrogen starvation-dependent cellular
differentiation in Saccharomyces cerevisiae. PLoS ONE. [IF=1.253, Cited=0, 22043304].

Tu, Benjamin P

Publication with MATCHING institution:

Publication with MISMATCHING institution:

Publication with MISSING institution: